Helen Frankenthaler Foundation

Mouse model research tool

The Lab Rat Model | Bio-Rad

Overview

Rats have been used as a model for humans for over 150 years. Rats were the original animal model with the use of mice becoming more prevalent due to the development of transgenic mice models.

Rats are however consistently more representative of humans compared to mice:

  • Being metabolically similar - better for pharmacokinetics studies
  • Having superior cognitive skills to mice – better for neurological disorders and behavioural studies
  • Being physically more similar – therefore better suited to toxicology, cardiovascular and immunology studies

And simply due to their larger size, rats are easier to handle and are better suited to transplantation research and repeat bleeds.

Now that the rat genome has been mapped and knock in and knock out transgenic rat strains are available the rat model may become used more widely.

Rat Facts

Below are a few interesting facts about lab rats:

  • Most laboratory rat strains are derived from the albino Wistar rat
  • The Sprague Dawley rat is used extensively in medical research in part because of its calmness and ease of handling, with a life span of 2-3 years
  • Rowett nudes are hairless rats that have no thymus
  • Zucker rats are used as a model for obesity and hypertension
  • The rat genome is 2.75 million base pairs long
  • Rats have between 20,000 and 25,000 genes, the same as humans
  • A 454 g rat has between 23 and 32 ml of blood
  • Rat heart rate is 330-480 beats per minute
  • Rat respiratory rate is 85 breaths per minute
  • The body temperature of a rat is 35.9-37.5ºC
  • Rats do not have gallbladders or tonsils
  • Rats cannot vomit

Immune Cell Frequencies

When designing your experiment it is important to consider the target cell frequency. The numbers of cells that need to be stained to collect a statistically relevant number of positive or negative cells need to be understood.This way you can avoid having to repeat the experiment simply due to the lack of statistical significance. Table 1 shows the relative frequency of cells in commonly used rat tissues. Go to our dedicated cell frequencies page for more detailed information.

Table 1. Rat immune cell frequencies.

SpleenThymusPeripheral Blood
Cell TypePercentCell TypePercentCell TypePercent
T cells31.5-33.5CD4+5.7-9.4T cells51.5-66.5
CD4+21.5-26.5CD8+2.3-6.9CD4+32-40
CD8+14-18CD4+/8+83-87.6CD8+18-26
B cells31.5-33.5CD4-/8-1.4-2.2B cells22.7-40.7
Monocytes1-6
Neutrophils14-20
Eosinophils1-4
BasophilsRare
γδ T cells1-2
NK cells6-10

Lineage Specific Rat Markers

Table 2 lists markers that can be used to determine different immune cell lineages.

Table 2. Rat lineage markers and antibodies.

CellMarkerAntibodies (catalog #)
Pan specific T cellCD3MCA772
Helper T cellCD4MCA55G
Cytotoxic T cellCD8 alpha, CD8 betaMCA48G,MCA938GA
ThymocytesCD90MCA47G
GranulocytesPan specificMCA967
MacrophagesCD11b, CD68, CD163, CD169MCA275G,MCA341GA,MCA342GA,MCA343GA
Dendritic cellsCD80, CD86MCA2874
Endothelial cellsCD31, RECA-1MCA1334G,MCA970GA

Key Rat Markers

As rats can be used in many research areas, there are a large number of commonly used markers. Table 3 lists key markers to identify various cell types.

Table 3. Key rat markers to target cell or research area along with available antibodies.

Key MarkerResearch Area / TargetAntibodies (catalog #)
CD3T cellsMCA772
CD4T cells and monocytesMCA55G, MCA153GA, MCA372G, MCA1022R
CD8 alphaT cells, NK cells and monocytesMCA48G
CD11bMacrophages, monocytes, dendritic cells, granulocytesMCA275G, MCA619R, MCA618R
CD25T cells and dendritic cellsMCA273GA
CD31PECAM-1 expressed on endothelial cells, platelets and leucocytesMCA1334G
CD43Leucocytes except B cellsMCA54G
CD45LeucocytesMCA43G
CD45RAB cellsMCA340G
CD68MacrophagesMCA341GA
CD71Pro proliferating cells of hematopoietic lineagesMCA155GA
CD86 (B7-2)Antigen presenting cells especially dendritic cells, macrophages and B cellsMCA2874
CD90Thymocytes, neuronal cells, stem cells and peripheral T cellsMCA47G, MCA04G
CD161NK cells and T cell subpopulationsMCA1427
MHC Class IAll nucleated cellsMCA51G, MCA94R, MCA156
MHC Class IIB cells, dendritic cells, macrophages and certain epithelial cellsMCA45G, MCA46G
IFN GammaCytokineMCA1301
TNF AlphaCytokineAAR33
GSK3 Beta (pSer9)Cell signalingAHP1233
P38 MAPK (pThr180/pTyr182)Cell signalingAHP905
NMDAR ReceptorsNeuroscienceAHP1004

Featured Key Markers CD44 and CD4

Mouse Anti-Rat CD44 Antibody, clone OX-50 recognizes the rat CD44 cell surface antigen, also known as Extracellular Matrix Receptor III. CD44 is a 482 amino acid ~85 kDa single pass type I transmembrane glycoprotein, expressed by T cells, B cells, macrophages and thymocytes. Mouse Anti-Rat CD4 (Domain 2) Antibody, clone OX-35 recognizes the rat CD4 cell surface antigen, a ~55kDa glycoprotein expressed by helper T cells and weakly by monocytes. Rat markers CD44 and CD4 have been used in flow cytometry (Figure 1), showing T cell, B cell and macrophage populations. Following this, CD4 has been used in immunohistochemistry showing T cells.

Fig. 1. Flow cytometry analysis of rat makers CD44 and CD4. A, A647 conjugated Mouse Anti-Rat CD4 (MCA153A647) and RPE conjugated Mouse IgG2a Isotype Control (MCA1210PE). B, A647 conjugated Mouse Anti-Rat CD4 (MCA153A647) and RPE conjugated Mouse Anti-Rat CD44 (MCA643PE). All experiments performed on red cell lysed rat blood gated on mononuclear cells.

Fig. 2. Immunohistochemistry analysis of rat marker CD4.CD4+ T cells clustering around central arteriole in the white pulp of rat spleen (cryosection) stained with MCA153.

Anti-Rat Antibodies and Related Products

Bio-Rad has an extensive range of rat monoclonal and polyclonal antibodies guaranteed for use in applications such as flow cytometry, western blotting, immunoprecipitation, IHC and, ELISA. These antibodies are available in various formats, however if you can’t find the format you need, you can also choose from a range of easy-to-use conjugation kits.

These anti-rat antibodies are targeted against markers for study in various research areas specifically immunology, pathology, toxicology, neurology and transplantation.

The following types of antibody are available:

ED Clone Antibodies

Bio-Rad has one the most comprehensive range of ED clone anti-rat antibodies primarily for the study of macrophage subtypes but also other related molecules.

Table 4. ED clone anti-rat antibodies, marker and cell type.

CloneTargetMarkerAntibody (catalog #)Applications
ED1MacrophagesCD68MCA341GAFC, IF/ICC, IHC-F, IHC-P, IP, WB
ED2MacrophagesCD163MCA342GAFC, IF/ICC, IHC-F, IHC-P, IP, WB
ED3MacrophagesCD169MCA343GAFC, IF/ICC, IHC-F, IP
ED7Macrophages, monocytes, dendritic cells, granulocytesCD11bMCA618RFC, FN, IHC-F
ED8Macrophages, monocytes, dendritic cells, granulocytesCD11bMCA619RFC, IHC-F
ED9Myeloid cells, neuronsCD172a (SIRP)MCA620RFC, IHC-F, IP, WB

Abbreviations: E, ELISA; FC, flow cytometry; IF/ICC, immunofluorescence/immunocytochemistry; IHC-F, immunohistochemistry-frozen; IHC-P, immunohistochemistr